Conda (R/Python package management)
From HPC
(Created page with '=Conda= Package, dependency and environment management for any language---Python, R, Ruby, Lua, Scala, Java, JavaScript, C/ C++, FORTRAN Conda is an open source package managem…') |
(→Install gdal) |
||
Line 55: | Line 55: | ||
==Installing packages== | ==Installing packages== | ||
- | ==Install gdal== | + | ===Install gdal=== |
Reference https://gdal.org/download.html#binaries (GDAL is most up to date on Conda Forge) | Reference https://gdal.org/download.html#binaries (GDAL is most up to date on Conda Forge) |
Revision as of 19:37, 20 June 2019
Contents |
Conda
Package, dependency and environment management for any language---Python, R, Ruby, Lua, Scala, Java, JavaScript, C/ C++, FORTRAN
Conda is an open source package management system and environment management system that runs on Windows, macOS, and Linux. Conda quickly installs, runs and updates packages and their dependencies. Conda easily creates, saves, loads, and switches between environments on your local computer. It was created for Python programs but it can package and distribute software for any language.
Conda as a package manager helps you find and install packages. If you need a package that requires a different version of Python, you do not need to switch to a different environment manager because conda is also an environment manager. With just a few commands, you can set up a totally separate environment to run that different version of Python, while continuing to run your usual version of Python in your normal environment.
https://docs.conda.io/projects/conda/en/latest/
Installing Conda (MiniConda)
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh bash ./Miniconda3-latest-Linux-x86_64.sh
miniconda will be installed to your home directory (~/miniconda3) and can be used with the command conda
(base) [username@comp25 ~]$ conda info
active environment : base active env location : /home/ussername/miniconda3 shell level : 1 user config file : /home/username/.condarc populated config files : conda version : 4.6.14 conda-build version : not installed python version : 3.7.3.final.0 base environment : /home/aitsswhi/miniconda3 (writable) channel URLs : https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/free/linux-64 https://repo.anaconda.com/pkgs/free/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /home/aitsswhi/miniconda3/pkgs /home/aitsswhi/.conda/pkgs envs directories : /home/aitsswhi/miniconda3/envs /home/aitsswhi/.conda/envs platform : linux-64 user-agent : conda/4.6.14 requests/2.21.0 CPython/3.7.3 Linux/3.10.0-957.12.1.el7.x86_64 scientific/7.6 glibc/2.17 UID:GID : 10033:10000 netrc file : None offline mode : False
Guides and useful resources
https://docs.conda.io/projects/conda/en/latest/user-guide/index.html
https://www.anaconda.com/distribution/
Installing packages
Install gdal
Reference https://gdal.org/download.html#binaries (GDAL is most up to date on Conda Forge)
conda install -c conda-forge gdal
Alternatively enable Conda Forge repository and then install GDAL
conda config --add channels conda-forge conda config --set channel_priority strict conda install gdal