About the Gecko Cluster

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(New page: A quick over view: * 30 compute nodes 2x 2.5GHz Quad Core Intel Xeons with 8GB of memory (i.e. 8 jobs with 2GB memory each per node) * Infiniband network for parallel computation * openMP...)
(Overview)
 
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=Overview=
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[[Image:Cluster-front.jpg|right|thumb|Gecko cluster, photo of cluster from front of rack]] The cluster was was deliverded to the school at the end of the summer 2008. It was purchased from StreamLine Computing with SRIF funding, to provide a central HPC resource for research at the School. The service is hosted by IT Services in the Keppel Street building. It has since been upgraded with some newer hardware and various OS updates.
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The OS running on the cluster is Scientific/Centos 7 linux  and the Job Scheduler is Open Grid Scheduler (previously Sun Grid Engine).
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A quick over view:
A quick over view:
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* 30 compute nodes 2x 2.5GHz Quad Core Intel Xeons with 8GB of memory (i.e. 8
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* Scientific Linux 7
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jobs with 2GB memory each per node)
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* 18 Nodes
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* Infiniband network for parallel computation
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** 18 nodes with between 32GB-256GB RAM and 8-32 CPU cores (a mixture of Intel and AMD CPUs)
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* openMPI (intel and gcc) for parallel computation across the inifiniband
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* Each user has 200GB of storage by default
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network.
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* OpenMP for single node multi core/processor parallel computation and OpenMPI ( gcc) for parallel computation across the cluster
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* Sun Grid Engine 6 to manage job submission and queue management
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* Intel C++/Fortran, GNU, Java 1.4,1.5,1.6 and R compilers
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* Stata 10 se
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Please [[Available Software]] page for a more complete of software on the cluster.
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* Also MPICH2 and SCORE for parallel computation, however these rely on gigabit
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ethernet which is much slower than the openMPI/ininfinband option.
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[[Image:Gecko-cluster-layout.png|left|thumb|Gecko cluster, rack layout]]
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[[Image:Cluster-back.jpg|left|thumb|Gecko cluster, picture from the back of the rack]]
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[[Category:About]]

Current revision as of 19:22, 20 June 2019

Overview

Gecko cluster, photo of cluster from front of rack
The cluster was was deliverded to the school at the end of the summer 2008. It was purchased from StreamLine Computing with SRIF funding, to provide a central HPC resource for research at the School. The service is hosted by IT Services in the Keppel Street building. It has since been upgraded with some newer hardware and various OS updates.
The OS running on the cluster is Scientific/Centos 7 linux  and the Job Scheduler is Open Grid Scheduler (previously Sun Grid Engine).

A quick over view:

  • Scientific Linux 7
  • 18 Nodes
    • 18 nodes with between 32GB-256GB RAM and 8-32 CPU cores (a mixture of Intel and AMD CPUs)
  • Each user has 200GB of storage by default
  • OpenMP for single node multi core/processor parallel computation and OpenMPI ( gcc) for parallel computation across the cluster


Please Available Software page for a more complete of software on the cluster.

Gecko cluster, rack layout


Gecko cluster, picture from the back of the rack
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