LibBi
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| - | To install LibBi, run the following commands (e.g., on the login node) | + | To install LibBi, run the following commands (e.g., on the login node): |
wget -O- http://cpanmin.us | perl - -l ~/perl5 App::cpanminus local::lib | wget -O- http://cpanmin.us | perl - -l ~/perl5 App::cpanminus local::lib | ||
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git clone https://github.com/lawmurray/LibBi.git | git clone https://github.com/lawmurray/LibBi.git | ||
cpanm ./LibBi | cpanm ./LibBi | ||
| + | |||
| + | You can test your installation using the following qsub script (putting in your email address in the second line): | ||
| + | |||
| + | #!/bin/bash | ||
| + | #$ -M email@lshtm.ac.uk -m be | ||
| + | #$ -N libbi_test | ||
| + | #$ -q short.q | ||
| + | #$ -l mem_free=4G,h_vmem=4.2G | ||
| + | #$ -V -cwd | ||
| + | |||
| + | libbi sample @~/LibBi/test.conf | ||
| + | |||
| + | If you save this in a file called, for example, ''libbi_test.sh'', and run | ||
| + | |||
| + | qsub libbi_test.sh | ||
| + | |||
| + | You should get an email that the test has succeeded. | ||
Revision as of 10:36, 9 July 2019
To install LibBi, run the following commands (e.g., on the login node):
wget -O- http://cpanmin.us | perl - -l ~/perl5 App::cpanminus local::lib eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib` echo 'eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib`' >> ~/.bash_profile echo 'export MANPATH=$HOME/perl5/man:$MANPATH' >> ~/.bash_profile source ~/.bash_profile git clone https://github.com/lawmurray/LibBi.git cpanm ./LibBi
You can test your installation using the following qsub script (putting in your email address in the second line):
#!/bin/bash #$ -M email@lshtm.ac.uk -m be #$ -N libbi_test #$ -q short.q #$ -l mem_free=4G,h_vmem=4.2G #$ -V -cwd libbi sample @~/LibBi/test.conf
If you save this in a file called, for example, libbi_test.sh, and run
qsub libbi_test.sh
You should get an email that the test has succeeded.
