LibBi
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(Difference between revisions)
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#$ -l mem_free=4G,h_vmem=4.2G | #$ -l mem_free=4G,h_vmem=4.2G | ||
#$ -V -cwd | #$ -V -cwd | ||
| - | + | ||
| - | + | libbi sample --target prior --model-file LibBi/Test.bi --end-time 1 --nsamples 32 --output-file test.nc | |
If you save this in a file called, for example, ''libbi_test.sh'', and run | If you save this in a file called, for example, ''libbi_test.sh'', and run | ||
Revision as of 11:44, 9 July 2019
To install LibBi, run the following commands (e.g., on the login node):
wget -O- http://cpanmin.us | perl - -l ~/perl5 App::cpanminus local::lib eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib` echo 'eval `perl -I ~/perl5/lib/perl5 -Mlocal::lib`' >> ~/.bash_profile echo 'export MANPATH=$HOME/perl5/man:$MANPATH' >> ~/.bash_profile source ~/.bash_profile git clone https://github.com/lawmurray/LibBi.git cpanm ./LibBi
You can test your installation using the following qsub script (putting in your email address in the second line):
#!/bin/bash #$ -M email@lshtm.ac.uk -m be #$ -N libbi_test #$ -q short.q #$ -l mem_free=4G,h_vmem=4.2G #$ -V -cwd
libbi sample --target prior --model-file LibBi/Test.bi --end-time 1 --nsamples 32 --output-file test.nc
If you save this in a file called, for example, libbi_test.sh, and run
qsub libbi_test.sh
You should get an email that the test has succeeded.
