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Revision as of 16:51, 16 October 2008 (view source) Aitsswhi (Talk | contribs) (New page: =qsub - Basic job script= Create a script, for example named myscript #!/bin/bash #$ -N MyJobName #$ -cwd -V myprog datafile You would then submit the script qsub myscript =Loo...) ← Older edit		Revision as of 14:52, 21 October 2008 (view source) Aitsswhi (Talk | contribs) Newer edit →
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	=qsub - Basic job script=		=qsub - Basic job script=
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	qsub myscript		qsub myscript
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		+	=qsub - Basic job script with email notification when job completes=
		+
		+	Replace me@lshtm.ac.uk with your email address
		+
		+	#!/bin/bash
		+	#$ -N MYHPCJOB
		+	#$ -M me@lshtm.ac.uk -m e
		+	#$ -V -cwd
		+	myprogram
		+
	=Looping/Repeating commands=		=Looping/Repeating commands=

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Revision as of 14:52, 21 October 2008

qsub - Basic job script

Create a script, for example named myscript

#!/bin/bash
#$ -N MyJobName
#$ -cwd -V

myprog datafile

You would then submit the script

qsub myscript

qsub - Basic job script with email notification when job completes

Replace me@lshtm.ac.uk with your email address

#!/bin/bash
#$ -N MYHPCJOB
#$ -M me@lshtm.ac.uk -m e
#$ -V -cwd
myprogram

Looping/Repeating commands

#!/bin/bash

for((i=1; 1<=4; i++));do
    echo $i
done

So to submit a 5 job's (job1, job2, job3, job4, job5) via qsub, you would do

#!/bin/bash

for((i=1; 1<=4; i++));do
    qsub job$i
done